Technology


Configuring my MacBook Retina (MacOSX 10.8.3)

I ‘ve got my new machine and in order to set up my Java / Python development environment from my previous computer I had to spend some  tweaking stuff for Mountain Lion 10.8.3

Below some links that helped me to solve some problems:

1) Updating the SVN to 1.7.9
http://jason.pureconcepts.net/2012/10/updating-svn-mac-os-x/

2) Configuring Apache, php and MySQL
http://coolestguyplanettech.com/downtown/install-and-configure-apache-mysql-php-and-phpmyadmin-osx-108-mountain-lion

3) Getting  MySQLDB to [...]

A pipeline for biomedical ontology maintenance and release

A pipeline for biomedical ontology maintenance and release

This note describes a maintenance and release pipeline for ontologies that leverage a modular reuse of external ontologies. Here we describe our approach and identify a set of requirements for continued enhancement and integration of external tools.

Installing Fuxi on Mac OS X 10.7.3

I have been trying to install Fuxi on my Mac (run-on Mac OS X 10.7.3. and Python 2.7.2 as default).
I’ve tried unsuccessfully to run the simple script:

wget http://peak.telecommunity.com/dist/ez_setup.py
python2.5 ez_setup.py
easy_install-2.5 fuxi

But no luck.
So I had to build everything form scratch. Below the steps to get Fuxi work.
Note that everything should be bind to Python 2.5 ( [...]

Lion and pycurl

Lion and pycurl

Just for future memory:

When upgrading to Lion (the following works for 10.7.2 and 10.7.3)  make sure:

1) Re-install Dev tools. Note that you will need to install the command line tools going to XCode > Preferences > Download.

2) Make sure you have a latest version of Python (you can download  dmg form python.org)

3) If you are [...]

Php, curl and SPARQL: turning shell scripts into (simple) dynamic web pages

Php, curl and SPARQL: turning shell scripts into (simple) dynamic web pages

We have SPARQL endpoints requiring http authentication and for my own needs I usually write shell scripts using curl to execute SPARQL queries and to save results in files to be handed to the team responsible for data QA.
I wanted to provide some simple tool for data QA folks (which have no technical knowledge [...]

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For Online File System:
- Box.net
- Trueshare
- Memopal

For the backup:
- Sugarsync
- Dropbox
- Ibackup

In the end the two solutions that I’ve recommended for the specific needs of my client are:

- Box.net as Online File Storage
Sugarsync as Backup Solution

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In a previous post I’ve highlighted the need of simple tools that can be easily accessed by a large number of users in order to
- ease the process of publishing and retrieving structured information
- show the value of having structured information on the web
Recently at Deri Giovanni Tummarello and his rsearch group has launched a service called Sigma Buy diazepam from trusted pharmacy, which easily fits in these categories. Diazepam discount, Sigma is a search engine for structured data based on Sindice.
Sindice parses the information on the web looking for RDFa and microformats, diazepam medication, Purchase diazepam, in particular it parses well known structured information in pages such as Wikipedia, Wordpress blogs, diazepam prices, Order diazepam from United States pharmacy, Linkedin, Flickr, diazepam price, coupon, Diazepam for sale, Facebook, etc, where to buy diazepam. Buy diazepam without prescription, retrieving information and translating it in triples.

Sigma presents this information and allows you to do some pretty cool stuff with it, order diazepam from mexican pharmacy.
The key features are:
- a cool and meaningful visualization of triples including the related sources
- the great interface that allows you to add additional sources of triples and to create your own “views” of information about a resources (the so called sigmas)
The “sigmas” intended as “views” of information about particular resource can be shared, blogged, and downloaded as JSON or RDF, buy diazepam from trusted pharmacy. Order diazepam no prescription, Ok I must admin that Sigma isn't probably an application “for the masses” but surely it has the great merit to show in a tangible way what it can be done with the Web of data.
I’ve played around a little bit with my name adding my blog as a source of additional RDFa and it was pretty easy and straightforward, purchase diazepam online. Buy diazepam without a prescription, In the following you'll find a snipped of the results returned form Sigma:

There is some funny stuff :-) but one can easily reject the info and build his/her own "clean" sigma.
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A very interesting discussion is going on in a  long thread Buy naltrexone from trusted pharmacy, started in the Linked Data Publc mailing list.
The main point is about what are the barriers that prevents the Semantic Web to spread and what it has to be done to make it easy for non-researcher to create, naltrexone in usa, Naltrexone san diego, publish and use RDF data. Personally I think that - in the first place - there's the need to define simple steps that web developers can take towards the Semantic Web, buy naltrexone without a prescription. Where can i order naltrexone without prescription, Besides the fact that RDFa seems to be the simplest (even not problem-free) approach so far, I think that the discussion and the efforts have to focus on tools can be provided to web developers to deal with semantic information, ordering naltrexone online, Buy naltrexone from canada, all the rest (as we've seen in the early days of the Web) will come.
I would like to see soon an intuitive RDFa extension for Dreamweaver, where to buy naltrexone, Where can i buy cheapest naltrexone online, or a decent Wordpress Plugin. Let's start form here and then we'll probably find even the best way to deal with the pain of publishing RDF as Linked Data on Apache, online buy naltrexone without a prescription. Naltrexone craiglist, But the latter is not the first issue that currently has to be solved. IMHO, saturday delivery naltrexone, Naltrexone in japan, at least. Naltrexone to buy online. Naltrexone to buy. Delivered overnight naltrexone. Buy no prescription naltrexone online. Naltrexone in australia. Purchase naltrexone online no prescription. Buy naltrexone without prescription. Naltrexone overseas. Fast shipping naltrexone. Naltrexone prescriptions. Naltrexone in india. Buy naltrexone online cod. Real brand naltrexone online. Order naltrexone from mexican pharmacy. Naltrexone paypal. Order naltrexone online overnight delivery no prescription. Buy naltrexone online without prescription. Online buying naltrexone hcl. Naltrexone tablets. Naltrexone medication. Purchase naltrexone. Where can i buy naltrexone online. Cod online naltrexone. Naltrexone in us. Naltrexone pills. Buy naltrexone no prescription. Where to buy naltrexone. Rx free naltrexone. Naltrexone gel, ointment, cream, pill, spray, continuous-release, extended-release. Naltrexone buy online. Buy generic naltrexone. Purchase naltrexone online. Naltrexone in mexico. Over the counter naltrexone. Buy cheap naltrexone. Order naltrexone no prescription. Buy naltrexone online no prescription. Next day naltrexone. Naltrexone from international pharmacy. Naltrexone prices. Naltrexone in uk. Sale naltrexone. Naltrexone in canada. Buy cheap naltrexone no rx. Naltrexone from canadian pharmacy. Order naltrexone online c.o.d. Naltrexone for sale. Naltrexone over the counter. Free naltrexone samples. Buy naltrexone from mexico. Buying naltrexone online over the counter. Where can i find naltrexone online. Naltrexone discount.

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Saturday and Sunday together with European elections, where to buy flomax, Sale flomax, Major election in my hometown (Florence, Italy) were taking place as well, online buy flomax without a prescription. Delivered overnight flomax, I was curios, after a thrilling NBA finals Game 2 won by Lakers to check the news related to the major election, flomax in india. Buy flomax online cod, The most obvious thing for me,  was to go and look for hashtags #Renzi and  #Galli  (the last names of Major candidates) on Tweetdeck  ..., buy flomax online without a prescription. and I was surprised to find few related tweets and no a sign of “real time” updates about elections (see picture below), buy flomax from trusted pharmacy. Flomax trusted pharmacy reviews,

tweetdeck
I’m pretty sure that the use of Twitter is not spread out in Europe (and in Italy in particular) as it is in the US. But what struck me the most was that for me it was almost obvious to look at the “streams” of tweets as the most easy way to have updated information about an important topic, order flomax online c.o.d. Real brand flomax online, The second thing that struck me was that pointing my browser to the “traditional” on-line newspaper pages, I had this uncomfortable feeling of looking to something outdated and totally useless, flomax pills. Fast shipping flomax, Then I realized that I was looking not just for the results, for the mere data (which, ordering flomax online, Flomax from international pharmacy, by the way, weren’t available yet, purchase flomax online, Flomax in japan, enhancing my sense of being cut off an event that was happening at that moment), but I was hoping to find comments, buy flomax from canada, Where can i find flomax online, people discussing results, I was looking for the “social dimension” of the event trying  to get into the news right while it was happening, order flomax from mexican pharmacy. Flomax tablets, This is a “need” that I haven't had before and to be honest I’m a little bit surprised and also "scared” about it. But besides these thoughts ( on which I’ll probably spend some few words on another pot sometimes soon)  I must admit that the “real time web” has already took its place as new paradigm in my interaction with online information and, where can i buy cheapest flomax online, Flomax in usa, while hoping to see for the next administrative elections to follow a @comunefirenze for instant updates,  I decided to use - taking advantage of the time zone- the “old” mobile phone to call my parents for updates, buying flomax online over the counter. Buy flomax without prescription, :-). Flomax prescriptions. Flomax prices. Flomax from canadian pharmacy. Flomax to buy online. Buy generic flomax. Purchase flomax online no prescription. Buy flomax without a prescription. Buy cheap flomax. Next day flomax. Buy flomax online no prescription. Flomax for sale. Flomax buy online. Free flomax samples. Flomax in canada. Where can i order flomax without prescription. Flomax paypal. Saturday delivery flomax. Where can i buy flomax online. Flomax in us. Buy no prescription flomax online. Flomax to buy. Flomax in mexico. Flomax san diego. Buy flomax online without prescription. Flomax in australia. Order flomax online overnight delivery no prescription. Buy flomax online with no prescription. Flomax medication. Flomax in uk. Rx free flomax. Order flomax from United States pharmacy. Over the counter flomax. Flomax discount. Order flomax no prescription. Flomax overseas. Flomax gel, ointment, cream, pill, spray, continuous-release, extended-release.

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